SE1220048

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11771
  • Citrullus lanatus
  • SE1220048
  • Mutator
  • M9
  • scaffold47:231780-232148
  • TAAAATTTT
  • AAAATTTTGGTTAAAATACCATTTTGGTCCTTATACTTTAGAATTTGTTCAATTTTAGTTTCATGTACTTTCAAATGTCCAATTTTAGTCCTTGTACTTTTAACAAATCTTAAATTTAATCCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
T        -          C     T       A      A  A                 T                         A         C      C              AT    TAA    AATTTTTATCAAAATTGATTAAATAATCACAATAATTTTTCATGCAAAGAAAC
 AAAATTTT GGTTAAAATA CATTT GGTCCTT TACTTT GA TTTGTTCAATTTTAGTT CATGTACTTTCAAATGTCCAATTTT GTCCTTGTA TTTTAA AAATCTTAAATTTA  CCTT   AGTT                                                     
 |||||||| |||||||||| ||||| ||||||| |||||| || ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||  ||||   ||||                                                     A
 TTTTAAAA CCAATTTTAT GTAAA CCAGGAA ATGAAA CT AAATAAGTTAAAATTAG GTATATGAAAGTTTACAGGTTAAAA CAGGAACAT AAAGTT TTTAGAATTTAAAT  GGGA   TACT                                                     
         T          A     -       C      C  C                 -                         A         A      A              CC    TGA    CAAAGTACACCTAAATAAAAGTGACATTTAAAACTGTTGTATAAGTGCATAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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