SE1220049

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11772
  • Citrullus lanatus
  • SE1220049
  • Mutator
  • M1
  • scaffold257:673067-673281
  • AAAATTCAA
  • T

Secondary structure and sequence

TSD    TIR
5'



3' 
     AAAAT    G  AAA    TTTAAATAGTAAAATTGTTGAAAATATTTACAACTAATAGCAAAATATCACAATCTATCTACGAGAGACCGCAATAAACTATTATTTG
          TCAA AA   TTAT                                                                                        
          |||| ||   ||||                                                                                         
          CCAA GA   AAAG                                                                                        
AACTTAAAAC    -  ---    TTTATATCGTTTTTCTTGGTTTTATAAATGTTTATATTGTTTTAAAGTAACAGATAGACACTATCTTGATAAACATAGTGCTATCTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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