Plant MITE

SE1250050

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11773
Citrullus lanatus
SE1250050
PIF/harbinger
To10
scaffold1546:142629-143133
TTA
AGGCCACGTTTACACCAGGTGAAAGGTAATC

Secondary structure and sequence

TSD TIR

5'

3'

TT             ---    -G       -----      TATC     TAATGTAAGAAGTAGGCCTCAGTTGATTGTTTTTGTTGTTGTCTACATGCATTCCATAATTGTAATGAGTTGTGAGACCCACCTTGAAATTTGTAATCAAATCCTACAATCTAATTGAGGCACGAAAGGTGTTCAACCTCATTGTAATTGAATTACATGAGACCCACTAACTTTATCATTGCCATTACAAATATTGTTATTGTAACA
  AGGCCACGTTTAC   ACCA  GTGAAAG     GTAATC    AATGG                                                                                                                                                                                                               
  |||||||||||||   ||||  |||||||     ||||||    |||||                                                                                                                                                                                                                
  TCCGGTGCAAATG   TGGT  TACTTTT     CATTAG    TTACT                                                                                                                                                                                                               
AT             GTT    AT       AATCA      --CC     CTAAAGTAACTACCTATTTAGCATTATCCGAATTTTACGTTTGTATTAACTTATCGATTAAAAATTAACACAAACGGATTTTAATACTTAAACAGTATAAAATGATAATGAATATCAATGGCAATGACGAACTGGGATTGCTATTACCCTTGTTAATTCTATTTCCATTTTCATTGTTATTTACACTGTCTAAGTATTAAAAATATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1250050

TTAGGCCACGTTTACACCAGGTGAAAGGTAATCTATCAATGGTAATGTAAGAAGTAGGCCTCAGTTGATTGTTTTTGTTGTTGTCTACATGCATTCCATAATTGTAATGAGTTGTGAGACCCACCTTGAAATTTGTAATCAAATCCTACAATCTAATTGAGGCACGAAAGGTGTTCAACCTCATTGTAATTGAATTACATGAGACCCACTAACTTTATCATTGCCATTACAAATATTGTTATTGTAACAGTATAAAAATTATGAATCTGTCACATTTATTGTTACTTTTACCTTTATCTTAATTGTTCCCATTATCGTTAGGGTCAAGCAGTAACGGTAACTATAAGTAATAGTAAAATATGACAAATTCATAATTTTAGGCAAACACAATTAAAAATTAGCTATTCAATTATGTTTGCATTTTAAGCCTATTACGATTTATCCATCAATGAAATCTCATTCCGATTACACTAATTTTCATTATGGTTTGGTAAACGTGGCCTTA

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