SE1220051

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11774
  • Citrullus lanatus
  • SE1220051
  • Mutator
  • M10
  • scaffold869:476340-476859
  • TTTTACAAA
  • AAAGGGAAAATTACCTTTTTAGTTCTCGTGTTTTGAATGATATGTTTGTTTGGTCCCTGAGTTTTACAAATATACTTTTTTATTCCCAAGTTTATAAGAATGTCTATTTGGTCACTGTGTTTTCAAAATGTACATTTTTTGGTCCCTGAATTTTTAAAAATAGGTTTAAGAGATC

Secondary structure and sequence

TSD    TIR
5'



3'
TTTTAC                         T  T                T          C         C    A          T                --     T        A   T               A         C     A           A          A  --------------CCTT     ATTTATTATAATTATTTTAAATAATTATATGACATTTTAAATTGGAAGAATAATTTTTAAAAA
      AAAGGGAAAATTACCTTTTTAGTTC CG GTTTTGAATGATATGT TGTTTGGTCC TGAGTTTTA AAAT TACTTTTTTA TCCCAAGTTTATAAGA  ATGTC ATTTGGTC CTG GTTTTCAAAATGTAC TTTTTTGGT CCTGA TTTTTAAAAAT GGTTTAAGAG TC                  AAATA                                                               
      ||||||||||||||||||||||||| || |||||||||||||||| |||||||||| ||||||||| |||| |||||||||| ||||||||||||||||  ||||| |||||||| ||| ||||||||||||||| ||||||||| ||||| ||||||||||| |||||||||| ||                  |||||                                                                
      TTTTCCTTTTAATGGAAAAATTAGG GT CAAAACTTATTATACA GTAAATCAGG ATTCAAAAT TTTA ATGAAAAAAT AGGGTTTAAATATTCT  TGCAG TAAACCAG GAT TAAAAGTTTTATATG AAAAAGTCA GGACT AAGAATTTTTA CCAAGTTTTC AG                  AAACT                                                               
AAACAT                         -  T                C          A         T    C          C                TA     T        G   T               -         A     C           A          C  TAAGTTCATAAAAAAAAG     AAAAAGTTTTTATTAATATACTATAAATTTTAATCTTTTTTTTATCAAAATCTCTCCTATACC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End