SE1220052

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11775
  • Citrullus lanatus
  • SE1220052
  • Mutator
  • M11
  • scaffold170:4280717-4280921
  • TAAATAGTT
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
                            TAAATA   GA     TTTCAAATATAACAAAATAAGTCAAACTACTTACAAATATAGAAAAATTTTAGGGATAGACCGCGATAAACTT
                                  GTT  GTTGT                                                                         
                                  |||  |||||                                                                         T
                                  CAG  TTTGA                                                                         
TTGATAAATCCTTTTAATAATATTTACCTTTTCA   --     TAAATGTTTATATCTTTTTAAAGTCACTATATAACGTTATCTGAAGATGGTGAAAAAGATAGTGGTTCGCTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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