SE1250054

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11777
  • Citrullus lanatus
  • SE1250054
  • PIF/harbinger
  • To11
  • scaffold95:2526038-2526236
  • TTA
  • TAGGGGGTGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
T      -      GGGATAAAAAGTGGAA  G GAAGAGTAAGGAGTTATGAAGTTTAGGGAGTTGCCCAAAGTATAAGGAAATGATAAGATATAAAATTGATGT
 TAGGGG GTGTTT                TA T                                                                        
 |||||| ||||||                || |                                                                         
 ATTCCC CACAAA                TC T                                                                        
       A      ----------ACGGGC  - CAACACTTCACCCTCAAGCACTTGAGGTGAGGAACAAACCCGGTTTCTCAACCACCTAGGGTGATGATTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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