SE1220055

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11778
  • Citrullus lanatus
  • SE1220055
  • Mutator
  • M2
  • scaffold83:110225-110417
  • TAAAATAAT
  • TGGGTTGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAATAA    -TT   TTCAAAT    C    TGA  G             A            T  C         ----------         A  AA
        TGGG   GTT       ATAG AAAA   GT AAACTATTTACAA TATAGAAAAATT TA TGTTTATTA          GCGATAGAA TC  
        ||||   |||       |||| ||||   || ||||||||||||| |||||||||||| || |||||||||          ||||||||| ||   
        ATCC   TAA       TATC TTTT   TA TTTGATAAATGTT ATATCTTTTTAA GT ACAAATAGT          CGCTATCTT AG  
 TAATAAA    TTT   TAATATT    -    TTA  G             C            T  A         TACTATGTTG         C  AT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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