SE1250057

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11780
  • Citrullus lanatus
  • SE1250057
  • PIF/harbinger
  • To12
  • scaffold170:1923214-1923388
  • TAA
  • AGGCCATGTTTACTTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA              --   TAGTAAACA      --    A       ATAAAAAG    GTCATTTAAATACGTTCCTAGAAAAAATAATTA
  AGGCCATGTTTACT  TCC         TAATCA  ATTG TGGTAAT        TGGG                                 
  ||||||||||||||  |||         ||||||  |||| |||||||        ||||                                  
  TCCGGTACAAATGA  AGG         ATTAGT  TAAC GTCGTTA        CTTA                                 
AA              TA   --------C      TT    -       --ACATTA    AAAGAAATAATAAGTATTAAGTGTTTTATAACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3