SE1220059

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11782
  • Citrullus lanatus
  • SE1220059
  • Mutator
  • M13
  • scaffold37:524426-524706
  • TAAATTTAA
  • TAAATTTAAGGTTAAATTATGAATTCAGTTCCTGTGATTTGAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
         A                C    C     A         G       - TAATCCTTATAATTTTGAAAGTTAGAATTTGGTCCCTATGGTTTGAAGAAAATTATAATTTAGTTTTATGGTTTGGAAAAAGTCA
 TAAATTTA GGTTAAATTATGAATT AGTT CTGTG TTTGAAAAA TTAGAAT T                                                                                     
 |||||||| |||||||||||||||| |||| ||||| ||||||||| ||||||| |                                                                                     G
 ATTTAAAT CCAATTTAATGTTTAA TCAG GATAT AAACTTTTT TCAATCT A                                                                                     
A        -                A    A     C         -       C AATCAGGGATACCAAATTTTAATACTAAATCATGGATATTAAACTAGTTTGGGAGTATTTATCAGGCACTTCATCCCTGATTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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