SE1220065

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11788
  • Citrullus lanatus
  • SE1220065
  • Mutator
  • M5
  • scaffold242:2658150-2658519
  • AAAAATAAA
  • GGGCAAATTGCAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAAATAAA   C            CCA   TTAGAGTATTGTGGTAGTTGCAATTACACCCTCAAACCTTCGGTTATAAAAATTGAGCCCCTAAACTTTACAAATGTTAAGATTGGACTCCTAAACTTCTACAAGTGTTAAAATTGGACCCTCAAGCTTACAATTATTGTAGAAATTGAATCAA
         GGG AAATTGCAAAAA   ACT                                                                                                                                                          
         ||| ||||||||||||   |||                                                                                                                                                          C
         CCC TTTAACGTTTTT   CAC                                                                                                                                                          
AAATAAAAA   A            -AT   CATCAAAGTTAATGTAGGAATTTGAAAGTTAAAAATTTTAAATTGGGAGTTTGAAAATGTTTACAATTTTAACCCAGTTTAACCTGGAAATTTAAATGTATTAATATATTTAACATTATAAACATATTCAAACTCCCAAGTAAAAAATAGTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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