SE1250067

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11790
  • Citrullus lanatus
  • SE1250067
  • PIF/harbinger
  • To4
  • scaffold161:193680-193987
  • TAA
  • AGGCCCCGTTTGGTAACCATTTTGTTTTTTTCTTTTTTTTTTTGTTAAATTAAACCTAT

Secondary structure and sequence

TSD    TIR
5'



3'
TA    C                         TC     T      TT       A     AGACACTT    ATA    A       - -  ---    T    GC   -TTAC     ATT      CCAAGCCAAATTTTGAAAACTAAAAAAAACAGCTT
  AGGC CCGTTTGGTAACCATTTTGTTTTTT  TTTTT TTTTTG  AAATTAA CCTAT        TTTC   TCTA ATTTCTT C CT   TTGT GTCT  CTT     CAATG   TAAAAA                                   
  |||| |||||||||||||||||||||||||  ||||| ||||||  ||||||| |||||        ||||   |||| ||||||| | ||   |||| ||||  |||     |||||   ||||||                                    
  TCCG GGCAAATCATTGGTAAAGCAAAAAA  AAAAA AAAAAC  TTTAATT GGATA        AAAG   AGGT TAAAGAA G GA   AACG TAGA  GAA     GTTAC   CTTAAG                                   
AA    A                         -C     C      -T       C     --------    ---    G       T T  CCA    -    AA   CTCAT     CAA      AATCAGTTTAAGGTTTTTGTTTTTGTTTTAAAATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End