SE1220071

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11794
  • Citrullus lanatus
  • SE1220071
  • Mutator
  • M5
  • scaffold83:154209-154562
  • TATATTTTT
  • GGGCAAATTGCAAAAATCACCCTTAAAGTATGGTGGTAGTTGCAATTATACCCGTAAGTTTTCAATTTTGAAAATTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TATATTTTT                             A                       G             T         ATTT      ---   AT  -  GTATTAAAATTGGATCAAATTGGACCTTCAAATGTACATAATTGTATAAAGTGTCACATTTGTATAAATTTGA
         GGGCAAATTGCAAAAATCACCCTTAAAGT TGGTGGTAGTTGCAATTATACCC TAAGTTTTCAATT TGAAAATTG    CTCAAG   CTT  AT AG                                                                         
         ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||    ||||||   |||  || ||                                                                          
         CCCGTTTAACGTTTTTGGTGGGGATTTCA ACCGCCATCAATGTTAATGTGGG GTTTGAAAGTTAA ATTTTTAAC    CCAGGT   TGA  AG TG                                                                         
TTTTTATAT                             C                       A             C         ----      ATT   --  A  TTTACAATTTTAATCTGGGAGTTCGAAAGTTATTAATATCTTTAATCTAAGTGATTACTATTTTTAACTTGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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