SE1230072

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11795
  • Citrullus lanatus
  • SE1230072
  • hAT
  • Hat5
  • scaffold659:453449-454028
  • CTCATTGC
  • CATTGCTAGGGGTGTTCA

Secondary structure and sequence

TSD    TIR
5'



3'
CT  T  -C         T  AATGACTAGACAACCC          GACT --        AAATAATAAGGGTTGGGTTGGGTTAGTTTAAAATTTGGGTTGGGTTGAGTTGGGGTTTTTTTTTTTTTTTTTTGTATTTTTCGGGTTGGGTTGGGTCTCGGGTTGCAATTTTGAAAATTCAGGTTGACCCAACCCAACCCCAATTTCTAATATTAATATTAAAAAAAATATATGTATATATATATTAGTTTAAGTTAGTGTTAAGAACTATTTTATATTTTTTTCTTGTATTAATGTAT
  CA TG  TAGGGGTGT CA                GAACAACCCG    A  CCCAACCC                                                                                                                                                                                                                                               
  || ||  ||||||||| ||                ||||||||||    |  ||||||||                                                                                                                                                                                                                                               T
  GT AC  ATCCCCACA GT                CCCAACCCAA    C  AACCCAAC                                                                                                                                                                                                                                               
 C  T  TC         T  ---------------G          ---- AT        CCACATAAAAAACTTGGTTGGGTTTTTAAGCCCAACCAGTCCAACCGATGGGCTTATTGAGCTTATGCCATGGGTTGGGTTGGGAATTTTAATCCCAACCCAACCCAACCCAACAACCCAACACACACACACTAAAAAAAAGAAAAGAAACGGGGGATAAAAAAAAAAAAAACCATTTTGTGTAACCGTATAATTACTTTGTGATTAACGGTATAGGTAACTAGGTTCTATTTCATATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End