SE1220075

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11798
  • Citrullus lanatus
  • SE1220075
  • Mutator
  • M5
  • scaffold83:3147452-3147774
  • TAATAATAA
  • AGGGCAAATTGGAAAACCACCCTTAAAATATAGCGGTAGTTGCAATTATCTCCTTAAACTTTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TAATAATA           GA    CAC       A   A C               -   CTT         ATAT    A   G  C   -C      AT                      C    T    -        TAACT     AG    ATTTTTA
        AGGGCAAATTG  AAAC   CCTTAAA TAT G GGTAGTTGCAATTAT CTC   AAACTTTCA    TAAA GTT AG TCT  AAACTT  ACAAGTGTTAAAATTGGACCCT AAAC TACA TAATTGTA     TTGAG  TTCA       
        |||||||||||  ||||   ||||||| ||| | ||||||||||||||| |||   |||||||||    |||| ||| || |||  ||||||  |||||||||||||||||||||| |||| |||| ||||||||     |||||  ||||        
        TCCCGTTTAAC  TTTG   GGAGTTT ATA T CCATTAACGTTAATG GAG   TTTGAAAGT    ATTT TAA TC AGA  TTTGAA  TGTTCACAATTTTAACTTGGGA TTTG ATGT ATTAACAT     AACTT  GGGT       
AATAATAA           AT    ATA       -   C A               T   -AT         AAAC    A   -  C   CA      GT                      C    T    T        -CTTT     --    ATTTACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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