Plant MITE

SE1250078

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11801
Citrullus lanatus
SE1250078
PIF/harbinger
To8
scaffold337:931791-932049
TTA
TAGGGGGTGTTTGGGGAACCGTAATAGGAT

Secondary structure and sequence

TSD TIR

5'

3'

T        -         A -----C          --   CTTGTAATGTAATGTAATCCAAAATGAATGTTTGGATTGAGCATTTTGAGCCCAATATGTAATACAAAAGTCATTCCGTACTGACAGTTTTC
 TAGGGGGT GTTTGGGGA C      GTAATAGGAT  AGA                                                                                            
 |||||||| ||||||||| |      ||||||||||  |||                                                                                             
 ATTCTCCA CAAACCCCT G      CATTATCCTA  GAC                                                                                            
         A         C ATCTTA          AT   CCTTAGTCTCTTCATAACTTTACGAATCGTGAATTCCTTATTTGCTTTTACTCTAACGTTTGGTACCTTTGCTATCCTTTATCCTAACCCAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1250078

TTAGGGGGTGTTTGGGGAACCGTAATAGGATAGACTTGTAATGTAATGTAATCCAAAATGAATGTTTGGATTGAGCATTTTGAGCCCAATATGTAATACAAAAGTCATTCCGTACTGACAGTTTTCAACCCAATCCTATTTCCTATCGTTTCCATGGTTTGCAATCTCATTTTCGTTTATTCCTTAAGTGCTAAGCATTTCAATACTTCTCTGATTCCCAGTAATCCTATTACATTCTAGCTCCCCAAACAACCTCTTA

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