SE1220079

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11802
  • Citrullus lanatus
  • SE1220079
  • Mutator
  • M5
  • scaffold22:3152754-3153106
  • TATAAATTA
  • TAGGGCAAATTGTAAAAACCACCCTTAAAGTATGGTTGTAGTTGCAATTAGACCCTCAAACTTTCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATAAAT                   C            T   T                   C    T     ---   C         TCTTCTAAACTTTTTCAAGTGTTAAAATTGGACCATCAAGCTTATAATAATAGTAAAAATTGGACCCACAAATGATAAAAATTGAACT
       TAGGGCAAATTGTAAAAAC ACCCTTAAAGTA GGT GTAGTTGCAATTAGACCCT AAAC TTCAA   TTG AAAAATTAG                                                                                        
       ||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||| |||| |||||   ||| |||||||||                                                                                        C
       ATCCCGTTTAATATTTTTG TGGGAATTTTAT CCA CATCAACGTTAATCTGGGA TTTG AAGTT   ATT TTTAATTTG                                                                                        
ATTTAAT                   A            C   C                   A    T     TGA   -         GGAGTTTTAATATATTTACAATTCTAACTCAGTTTAATTTGGAAGTTTGAATATATTAACATATTTACATTGTAAACATATTCAAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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