SE1220081

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11804
  • Citrullus lanatus
  • SE1220081
  • Mutator
  • M14
  • scaffold266:377307-377872
  • TAAAAATTA
  • TTAGGGAAAATATCAATTTACACCCCTAAACTTTAAGAATTATATCAATGTAAA

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAAA      A             C  CCC        AA   -  A  T    GT   CCCTAAAT    A   G        GT  CC  AAA       T           T     CCTTAATATTATG    GTT -  AAAAAACACCATGTGAAAATTATAATTGTTATTGATTAAACCTCTATACTTTTATGAATGAATCAATTTAGACTCTTAAAATTTTCCTTTGGAAATCGTCCATACATTTACATTAATCATCCATTTTGTAAAACTGACATTTGAAG
      TTAGGG AAATATCAATTTA AC   TAAACTTT  GAA TT TA CAAT  AAA        TAAT ATT TATCAATT  AA  CT   CTTTTGT AGTGTGTCAAT TACAC             TTCA   T GG                                                                                                                                                  
      |||||| ||||||||||||| ||   ||||||||  ||| || || ||||  |||        |||| ||| ||||||||  ||  ||   ||||||| ||||||||||| |||||             ||||   | ||                                                                                                                                                  A
      AATCCC TTTATAGTTAAAT TG   ATTTGAAA  CTT AA AT GTTG  TTT        ATTA TAA ATAGTTAA  TT  GA   GAAAGTA TTACATAGTTA ATGTG             AGAG   G GG                                                                                                                                                  
ATTAAA      G             A  TAC        -C   C  C  T    AT   CGAACTTT    C   G        AT  TA  CTC       T           C     -------------    --- A  TTTAAAGTAAGCTAGTTACAGCCCCCTTTGTATATTGAATTCAGTTAATTTAAGGATTTAAAAAGTAGTCAGTTAGTTAAATCTAATAAGTAATGTTAAAGGAAACTTTTAGTAAGATACGTAATTAAGAGTCTGCACACATCTGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End