SE1220082

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11805
  • Citrullus lanatus
  • SE1220082
  • Mutator
  • M5
  • scaffold144:671945-672298
  • AAAATTATA
  • GGGAAAATTGCAAAAACCACCCCTAAAATATGGTGGTAGTTGCAATTATACCCTTCAACTTT

Secondary structure and sequence

TSD    TIR
5'



3'
AAAATTATA   AAA                C    A              C    A  -     C      CAACTT        AA     C      A     T    AAAATTGGGTC      G  A     A      -        T      ---TA   TT  -  T       GG
         GGG   ATTGCAAAAACCACCC TAAA TATGGTGGTAGTTG AATT TA CCCTT AACTTT      TAAAAATT  GCCCT AAACTT TATAA TGTT           AAATTG AC TTCAA CTTACA TAATTGTA AAATTG     ACA  TG TA AAATTTG  
         |||   |||||||||||||||| |||| |||||||||||||| |||| || ||||| ||||||      ||||||||  ||||| |||||| ||||| ||||           |||||| || ||||| |||||| |||||||| ||||||     |||  || || |||||||  T
         CCC   TAACGTTTTTGGTGGG ATTT ATACCACCATTAAC TTAA GT GGGAA TTGAAA      ATTTTTAA  CGGGA TTTGAA ATATT ACAA           TTTAGT TG GAGTT GAATGT ATTAACAT TTTAAC     TGT  AC AT TTTAAAT  
ATATTAAAA   GTC                C    C              A    A  A     T      ATTAGC        CC     -      G     T    ----------A      G  G     C      T        C      CTAGG   TT  T  T       TC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End