Plant MITE

SE1250084

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11807
Citrullus lanatus
SE1250084
PIF/harbinger
To7
scaffold83:3572341-3572576
TTA
AGTGCATATTTGCAAGTGATTTTAAAATTGTTAAAATCACTTTTGTCATGTTTAAATCACTTTGAAACA

Secondary structure and sequence

TSD TIR

5'

3'

TT  T C       CA              T          C        TG      -TC   TT      CACC      CAC            AATTTTTACTTTACACTTTTA
  AG G ATATTTG  AGTGATTTTAAAAT GTTAAAATCA TTTTGTCA  TTTAAA   ACT  GAAACA    TTTAAT   TCAAAATTAATT                     
  || | |||||||  |||||||||||||| |||||||||| ||||||||  ||||||   |||  ||||||    ||||||   ||||||||||||                     G
  TC C TATAAAC  TCACTAAGATTTTA CAATTTTAGT AAAACAGT  AAATTT   TGA  CTTTGT    AAATTA   AGTTTTGGTTAA                     
AT  T A       CC              C          T        TA      TAA   CC      ATAA      ATA            AACTATTATACTTTTAACGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1250084

TTAGTGCATATTTGCAAGTGATTTTAAAATTGTTAAAATCACTTTTGTCATGTTTAAATCACTTTGAAACACACCTTTAATCACTCAAAATTAATTAATTTTTACTTTACACTTTTAGATGCAATTTTCATATTATCAAAATTGGTTTTGAATAATTAAAAATATGTTTCCCAGTAATTTTAAAATTGACAAAATTGATTTTAACCATTTTAGAATCACTCCCAAATATACTCTTA

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