SE1220085

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11808
  • Citrullus lanatus
  • SE1220085
  • Mutator
  • M9
  • scaffold253:232725-233090
  • TAAATTTTA
  • TAAATTTTAGATTAAAATACTCTTTTGGTCCCTATATTTTGTAATTTGTTCAATTTAATCTCTATACTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
    T     A        CTC        CC         TAA            -AA                T -  TAATTTTAATCTTTGTACTTTCAATACATTTTAAATTTAGTCCCTCAAAGTTAAATTTTATCGAAATTGATTAAATAATCACAAAATTTTTTATGCAAAGAAAC
TAAA TTTAG TTAAAATA   TTTTGGTC  TATATTTTG   TTTGTTCAATTT   TCTCTATACTTTCAAA G TT                                                                                                        
|||| ||||| ||||||||   ||||||||  |||||||||   ||||||||||||   |||||||||||||||| | ||                                                                                                        A
ATTT AAATC AATTTTAT   AAAACCAG  ATATGAAAC   AAACAAGTTAAA   AGGGGTATGAAGGTTA T TA                                                                                                        
    T     C        AAT        AA         TTC            ATC                - T  GAATTTAAATCAAAGATGATGATCAAACAACACTTAAAAAAAGTAAGGAAAATAAAAGATTAATTGTAAAAGCGATATTTGATACTCTTTTATAAGTGTATAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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