SE1230086

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11809
  • Citrullus lanatus
  • SE1230086
  • hAT
  • Hat6
  • scaffold162:1484300-1484720
  • CTTTTATC
  • CAGTGTTTTTAAATGCCCGAGGCGCACTAAGGCGCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTTTATC         T   T    ---GA     --A  A    G   T     TCTGGAGCCTACGTGCAGGGCGCACAAAAAGGCGCGGGCTTTTTTTTTGTGAGGCGCACTATATATAAAAGTATTACATTAAAAAGAGAAAGCATAGTTGAAGTGGAAATATGGAATAAAAGACTCCAAACACAAGAAATTTTGCATTTAGGCTTTG
        CAGTGTTTT AAA GCCC     GGCGC   CT AGGC CAA GGCCC                                                                                                                                                             
        ||||||||| ||| ||||     |||||   || |||| ||| |||||                                                                                                                                                              
        GTCACAAAA TTT CGGG     CCGCG   GG TCCG GTT CACGT                                                                                                                                                             
CTATTTTC         T   T    AGAAC     CGC  A    A   C     CCAGATCGCGGAGCGGAACCTTTCCGCTCCGAGTGTTTTATTCCACATGCGAAAAACACTTCGGGGTTCCGAGTTTCGGGACACGGAAGTCCGAAAAAGTAATAAAAATCTTTTATCATTGTTAATTCCCAAAAGGAAGAAATAATTGATTTTGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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