SE1220088

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11811
  • Citrullus lanatus
  • SE1220088
  • Mutator
  • M16
  • scaffold3:5547840-5548293
  • TATATCTTA
  • TAGGTTTAAATATTACTTTAGTTTCTATAGTTTTGACTTTGATTCATTTTGGTCTCTACACTTTCAAATGTTCATTTTAGCCCCTATACTTTCAATTTTGGTTCATTTTGGTCCCTATACTTACAAAAGGTTCAATTTGGTCCTTGTACTTTTAATTTTGGTTCAATTTGGTTTTTATACTTTTAAAAGGTG

Secondary structure and sequence

TSD    TIR
5'



3'
TATATCT                   A    CTA  G          GA  C        C   -AC     -C             AGC  C    C       T      -           C             G   CAA      CC                      A           T     T        ATTA      TA  T   TTTTCATTTT
       TAGGTTTAAATATTACTTT GTTT   TA TTTTGACTTT  TT ATTTTGGT TCT   ACTTT  AAATGTTCATTTT   CC TATA TTTCAAT TTGGTT CATTTTGGTCC TATACTTACAAAA GTT   TTTGGT  TTGTACTTTTAATTTTGGTTCA TTTGGTTTTTA ACTTT AAAAGGTG    GTTTGG  CT TTA          
       ||||||||||||||||||| ||||   || ||||||||||  || |||||||| |||   |||||  |||||||||||||   || |||| ||||||| |||||| ||||||||||| ||||||||||||| |||   ||||||  |||||||||||||||||||||| ||||||||||| ||||| ||||||||    ||||||  || |||          T
       ATCCAAATTTATGATGAAA CAGG   AT AAAACTGAAA  AA TAAAATCA AGA   TGAAA  TTTACAAGTAAAA   GG ATAT AAAGTTG AACCAA GTAAAATCAGG ATATGAATGTTTT TAA   AAACCA  AACATGAAAGTTGAAACCAAGT AAACTAGGAAT TGAAA TTTTTCAC    TAAATC  GG AAT          
ATTCTAT                   C    AAC  G          AC  A        -   ACA     AA             CTA  A    A       T      A           -             A   ATA      AT                      A           -     T        -CAG      TA  T   TTTTATTTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End