SE1250089

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11812
  • Citrullus lanatus
  • SE1250089
  • PIF/harbinger
  • To4
  • scaffold3:3331180-3331483
  • TAA
  • AGACCCCATTTGGTTACCATTTCGTTTTTTATTTTTGTTTTTGAAAATTAAGTCTAT

Secondary structure and sequence

TSD    TIR
5'



3'
TA  A    A   G  T    T          A                          TTTCTCCCCATGTCTT       AC     -     -ACAATAG   ----AAT           AT        - A  AA    TT   A       TTTT
  AG CCCC TTT GT ACCA TTCGTTTTTT TTTTTGTTTTTGAAAATTAAGTCTAT                ACATTGC  TCTCT TAAGT        TTA       TTTTTTGCCAA  TTTAAAAA C AA  CAAG  TTT AAAGCTA    
  || |||| ||| || |||| |||||||||| ||||||||||||||||||||||||||                |||||||  ||||| |||||        |||       |||||||||||  |||||||| | ||  ||||  ||| |||||||    T
  TC GGGG AAA CA TGGT AAGTAAAAAA AAAAACAAAAACTTTTAATTCGGATA                TGTGATG  AGGGA GTTTA        AAT       GAAAAATGGTT  AAATTTTT G TT  GTTT  AAA TTTTGAT    
AA  C    A   A  T    T          C                          --------------TC       AA     A     AATAAGAA   GATAGAT           AC        T A  CG    TT   C       TTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End