Plant MITE

SE1250091

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11814
Citrullus lanatus
SE1250091
PIF/harbinger
To4
scaffold7:3485313-3485619
TTA
AGGCCCTATTTTGTAACTATTTCTTTTTGTTTTTGTTTTTTAAAATTAAGCT

Secondary structure and sequence

TSD TIR

5'

3'

TT       A   T     T    ---C      T     -     T           -     ACACTACTTCTACCTTCAAATTTCTTCCTTTGTTGTCAAGTTTTTACCAATGATTTAAAAAACCAAGCCAAATTTTGAAAACTAAAAAACAT
  AGGCCCT TTT GTAAC ATTT    TTTTTG TTTTG TTTTT AAAATTAAGCT TAGAG                                                                                            
  ||||||| ||| ||||| ||||    |||||| ||||| ||||| ||||||||||| |||||                                                                                             
  TCCGGGG AAA CGTTG TAAA    AAAAAC AAAAC GAAAA TTTTGATTCGG TAAAG                                                                                            
AT       C   C     T    ACAA      C     T     C           A     AAGGTGTAAAAAATGTTAGTAAATGTATAAATAATTAATATTACCAACTTAAGAATTGCCTTAAAATTTTTGTTTTTGTTTAAAATTTTCGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1250091

TTAGGCCCTATTTTGTAACTATTTCTTTTTGTTTTTGTTTTTTAAAATTAAGCTTAGAGACACTACTTCTACCTTCAAATTTCTTCCTTTGTTGTCAAGTTTTTACCAATGATTTAAAAAACCAAGCCAAATTTTGAAAACTAAAAAACATAGCTTTTAAAATTTGTTTTTGTTTTTAAAATTCCGTTAAGAATTCAACCATTATAATTAATAAATATGTAAATGATTGTAAAAAATGTGGAAGAAATAGGCTTAGTTTTCAAAAGTCAAAACCAAAAAAACAAAATTGTTGCCAAACGGGGCCTTA

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