SE1220092

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11815
  • Citrullus lanatus
  • SE1220092
  • Mutator
  • M5
  • scaffold144:671945-672298
  • TATAATTTT
  • GGGCAGATTGCAAAAACCACCCGTAAAGTATGGTGGTAATTGTAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATAATTTT   C                  G               A        TCAT     A          CG               -      C     A    T    CACACCC   AGCTTACAATAATTGTAGAAATTGGATCCACAAATGATAAAAATTTAAGACCCA
         GGG AGATTGCAAAAACCACCC TAAAGTATGGTGGTA TTGTAATT    CCCTT AACTTTTAAT  TAAAAATTGGGCCCT AAACTT TATAA TGTT AAAT       TCA                                                      
         ||| |||||||||||||||||| ||||||||||||||| ||||||||    ||||| ||||||||||  ||||||||||||||| |||||| ||||| |||| ||||       |||                                                       
         CCC TTTAACGTTTTTGGTGGG ATTTTATACCACCAT AACGTTAA    GGGAA TTGAAAGTTG  ATTTTTAATTCGGGA TTTGAA ATATT ACAA TTTA       CAG                                                      
TTTTAATAT   T                  G               C        -TAT     G          AA               G      T     A    T    ----ACC   TTTAACCTGTAAGTTTGAATGTATTAACATATTTAACATTGTAAACATATTTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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