SE1220095

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11818
  • Citrullus lanatus
  • SE1220095
  • Mutator
  • M16
  • scaffold387:917572-918002
  • TTCTAAAAA
  • A

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCTAA      --   AATACTAC  TGGTCCCTAAACTTTTGACTTTGGTTTATTTTGGTCCATGTACTTTCAAAAAGTTCATTTTAGGCCATATAATTTCAACTTTGGTTCATTTTGATCCCTATACTTATAAAAGGTTTAGTTTGGTTTTTGTACTTTTAATTTTGGTTCAATTTGGTCCTTATACTTTTTAAAAAATGACTATTATGGACCTTTCA
      AAATGT  TTA        TT                                                                                                                                                                                                  
      ||||||  |||        ||                                                                                                                                                                                                  T
      ATCTTC  AAT        TT                                                                                                                                                                                                  
  AAAA      CA   --------  ATAATAAAATTAAGGAGATAAAAATCAAAACCAAATAAAGTTTACAAATAAAGTCAGGGAAGATAAAAGTTGAAACCAACTAAAATCAGTAATATGAGAGTTTTACAAGTAAAGCCAAGGAAGATGAAAGTTGAAATCAAGTAAAACTAGGAATTTGAAAGTTTTTACCGATGAAACTAGGGAATTTTTACTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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