SE1220096

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11819
  • Citrullus lanatus
  • SE1220096
  • Mutator
  • M9
  • scaffold150:343657-344053
  • TTATTATTA
  • AGGTTAAAATATCATTTTGGTCCCTATATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATTATT                     C          CAAG                 CC                C                    C       C   C     G     A TACTT   T     -----------   TTTTTTCATTACTTTTTGTTTTTTATTACCATTTTCACTATTAATTTTCAA
        AGGTTAAAATATCATTTTGGT CCTATATTTT    TTTGTTCAATTTTAGTT  TATACTTTCAAATGTC AATTTTAGTCCTTGTACTTT AATAAAT TTA GTTTA TCCCT C     GTT ATTTT           GAA                                                   
        ||||||||||||||||||||| ||||||||||    |||||||||||||||||  |||||||||||||||| |||||||||||||||||||| ||||||| ||| ||||| ||||| |     ||| |||||           |||                                                   A
        TCCAATTTTATGGTAAAACCA GGATATGAAA    AAACAAGTTAAAATCAG  ATATGAAAGTTTACAG TTAAAATCAGGAACATGAAA TTATTTA AAT TAAGT AGGGA G     CAA TAAAA           TAA                                                   
ATTATTAT                     A          CGTA                 AA                A                    A       C   T     A     - --TTT   T     ATCGCTTTAAC   TGTATTAGTATTATTAAAATTACGTTTCTTTGTGTTATACACTTATAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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