SE1220098

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11821
  • Citrullus lanatus
  • SE1220098
  • Mutator
  • M14
  • scaffold465:105507-105961
  • TTATTATTA
  • AGGGCAAATATCAATTTATACCCTAAACTTTAGAGGTTGTATCAATTTATACCCTAAACTAATAATTGTGTCAATTTAAACCCTGAACTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TTATTATT    C                  -        -  A               T  CC         A                       C    ACAAC       -ACTT                           T     CTAAAC      T                  C       -      T             CCC    TTATGTTTTATTT
        AGGG AAATATCAATTTATACCC TAAACTTT AG GGTTGTATCAATTTA AC  TAAACTAAT ATTGTGTCAATTTAAACCCTGAA TTTT     TGTGTCA     AACCCCAAACTAGTAATTGTATTAATT AAACC      TTTCAT AGTGTATCAATTTAAACC TGAACTT CATAAG GTATCAATTTAAA   TCCA             
        |||| |||||||||||||||||| |||||||| || ||||||||||||||| ||  ||||||||| ||||||||||||||||||||||| ||||     |||||||     ||||||||||||||||||||||||||| |||||      |||||| |||||||||||||||||| ||||||| |||||| |||||||||||||   ||||             G
        TCCC TTTATAGTTAAATATGGG ATTTGAAA TC CCAACATAGTTAAGT TG  ATTTGATTA TAACATAGTTAAATTTGGGACTT AAAA     ACATAGT     TTGGGGTTTGATTATTAACATAGTTAA TTTGG      AAAGTA TCATATAGTTAAATTTGG ATTTGAA GTATTT TATAGTTAAATTT   TGAA             
ATTATTAT    T                  G        C  -               T  AA         A                       -    -CCCA       CAAAT                           T     AACTTA      T                  A       A      C             ---    AGTATTCACATAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End