Plant MITE

SE1220099

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11822
Citrullus lanatus
SE1220099
Mutator
M6
scaffold170:6005677-6005972
TTAGTTTGT
TAGGGATAGTTGCAAATATAGCA

Secondary structure and sequence

TSD TIR

5'

3'

TTAGTTTG     A         ATA     ATTAG      AAT  -   ---    TATAGCACAATACAAAAGAATTTGCAGATTTAGAAAAATTTAGATTTTTCCTTCAAATCTATCGGTGATAGACCATATCAATAGTATGGGTCTATCAG
        TAGGG TAGTTGCAA   TAGCA     TTCTAA   AT TTG   CAGA                                                                                                  
        ||||| |||||||||   |||||     ||||||   || |||   ||||                                                                                                   
        ATCCC ATTAACGTT   ATCGT     AAAAAT   TT TAT   TAAT                                                                                                  
 ATGTTTG     -         --C     -----      ---  C   TAT    TCACATATTATTGTAAAAATTTTTTAACATTTATATCGTTTTAGATAGTCACTATCTGACATAGCGACTATCTGAGGATAATCACTATACAAGATAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1220099

TTAGTTTGTAGGGATAGTTGCAAATATAGCAATTAGTTCTAAAATATTTGCAGATATAGCACAATACAAAAGAATTTGCAGATTTAGAAAAATTTAGATTTTTCCTTCAAATCTATCGGTGATAGACCATATCAATAGTATGGGTCTATCAGTGATAGAACATATCACTAATAGGAGTCTATCAGCGATACAGTCTATCACTGATAGATTTTGCTATATTTACAATTTTTTAAAAATGTTATTATACACTTAATTATTATCTTTAAAAATGCTACTTGCAATTACCCTAGTTTGTA

Copy Cancel