SE1250102

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11825
  • Citrullus lanatus
  • SE1250102
  • PIF/harbinger
  • To4
  • scaffold83:1793232-1793539
  • TAA
  • AGGCCCCGTTTGGTAACCATTTTATTTTTTGGTTTTGGTTTTTGAAAATTAAGCCTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                       A       GT    G                    -------   C CCATGTTTCTGCCAATGATCTGCATCTTTCTTAAGTACAATGGTTGAATTCTTAGTTAAATTCAAAAAACTAAAACAAATTTTTAA
  AGGCCCCGTTTGGTAACCATTTT TTTTTTG  TTTG TTTTTGAAAATTAAGCCTAT       TTC T                                                                                      
  ||||||||||||||||||||||| |||||||  |||| ||||||||||||||||||||       ||| |                                                                                      A
  TCCGGGGCAAATCATTGGTAAAG AAAAAAC  AAAC AAAAACTTTTAATTTGGATA       TGA A                                                                                      
AA                       C       AA    -                    TCTGTGA   - AGTAAAAGTTTAAAGAAGGAACAACAGATTAAAAATTGTTACAAAATTTTTTGGTTCGGTTTAAAACTTTTGATTTTTTTCATCGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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