SE1250104

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11827
  • Citrullus lanatus
  • SE1250104
  • PIF/harbinger
  • To4
  • scaffold300:823668-823972
  • TTA
  • TAGGCCCCGTTCTGTAACCATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
T    -       CT          CGTTTT    -TTTTTGTTTTTG              AGACACTA   GCA   TCAAA  -    C      T    A        --       TTAA       AGCCAAAATTTGAAAACTAAAAAAAATAGCTTT
 TAGG CCCCGTT  GTAACCATTT      TTTA             AAAATTAAGTCTAT        TTT   CCT     TT CATT ATTTGT ATCT CTTTTAAC  CAATGGT    AAAATCA                                 
 |||| |||||||  ||||||||||      ||||             ||||||||||||||        |||   |||     || |||| |||||| |||| ||||||||  |||||||    |||||||                                 T
 ATTC GGGGCAA  CATTGGTAAA      AAAT             TTTTAATTCGGATG        AAG   GGA     AA GTAA TAAACG TAGA GAAAATTG  GTTATCA    ACTTAAG                                 
     A       AC          ------    TTTTTTTTTTAAA              --------   GAG   TAAAG  T    C      -    -        TT       ----       AAACGGTTTAAGTTTTTTGTTTTAGTTCAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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