SE1250106

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11829
  • Citrullus lanatus
  • SE1250106
  • PIF/harbinger
  • To4
  • scaffold27:1376776-1377084
  • TAA
  • AGGCCTCGTTTGGTAACCATTTAGTTTTCTGTTTTTGTTTTTGAAAATTAAGTCTAT

Secondary structure and sequence

TSD    TIR
5'



3'
TA           G     C    A     C                     AG     TTACTCTTCATTTCTT     G    G     - -    AA  A  A      AA      --G    --A  C       A  AA        TA       TTTT
  AGGCCTCGTTT GTAAC ATTT GTTTT TGTTTTTGTTTTTGAAAATTA  TCTAT                ACATT ATTT CATCT C TATG  GT CA TAGTTG  TTCTTT   TCAA   TT AAAAAAC AA  CAAAATTT  AAAACTA    
  ||||||||||| ||||| |||| ||||| |||||||||||||||||||||  |||||                ||||| |||| ||||| | ||||  || || ||||||  ||||||   ||||   || ||||||| ||  ||||||||  |||||||     
  TCCGGGGCAAA CATTG TAAA CAAAA ACAAAAACAAAAATTTTTAAT  AGATA                TGTAA TGAA GTGGA G ATAC  TA GT ATCAAT  AAGAAA   GGTT   AA TTTTTTG TT  GTTTTAAA  TTTTGAT    
AA           A     T    G     T                     AA     --------------TC     -    G     A T    -A  A  A      AG      AAT    ATC  A       G  CG        -C       TTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End