SE1220107

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11830
  • Citrullus lanatus
  • SE1220107
  • Mutator
  • M5
  • scaffold2:6580809-6581086
  • AACTTTTTA
  • GGGCAAATTGCAAAAAGCACCCCTATAGTATGAAGGTAGTTGCAATTAGACCCTTAAACTTTTAATTCTAAAACTTGAGCCTTCAAACTTATATA

Secondary structure and sequence

TSD    TIR
5'



3' 
AACTTTTTA                  -       T     GAA              G                  C     C  GA   T  -      A    AATTTTAAAATT  -  -C               -  TTACA
         GGGCAAATTGCAAAAAGC ACCCCTA AGTAT   GGTAGTTGCAATTA ACCCTTAAACTTTTAATT TAAAA TT  GCC TC AAACTT TATA            GG GT  AAATTGGACCTTCAA AC     
         |||||||||||||||||| ||||||| |||||   |||||||||||||| |||||||||||||||||| ||||| ||  ||| || |||||| ||||            || ||  ||||||||||||||| ||      
         CCCGTTTAACGTTTTTTG TGGGGAT TTATA   CCATCAACGTTAAT TGGGAGTTTGAGAGTTAA ATTTT AA  CGG GG TTTGAA ATGT            TC CA  TTTAACCTGGGAGTT TG     
AATTTTCAA                  G       T     ACA              G                  C     T  -A   T  A      G    ------------  A  AC               C  TTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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