SE1220108

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11831
  • Citrullus lanatus
  • SE1220108
  • Mutator
  • M14
  • scaffold387:1418525-1419081
  • TAAAAATAA
  • AGGACAAATATCAATTTATAACCTTAAACTTTGGGGTTAGTATAAATTACAACCCTTAACTAATAATTGTTTCCATTTAAACCATAAACTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TAAAAATA   AC               A    -        -     A  ATA    AC    CTT             T  CAT       A        CACAAG  C                  C  AAT   --A  C  CT   A                ATTTATATA       C  -                C   C         A    ATC    TTAC   --TA     C     AA    A     ---------------C    GT    GCACTT
        AGG  AAATATCAATTTATA CCTT AAACTTTG GGGTT GT   AATT  AACC   AACTAATAATTGT TC   TTAAACC TAAACTTT      TG ATCAATTTACACCCTTTT TA   TTC   TT GA  AAT TTGTGTGAAACTTATA         AATTAAA TC CTAAATTTTCATAAAT AAT AATTTAGAC TTTT   ACGA    CTC    AAAAT ATTCA  TATT ATTCT                AAAC  GTGT      
        |||  ||||||||||||||| |||| |||||||| ||||| ||   ||||  ||||   ||||||||||||| ||   ||||||| ||||||||      || |||||||||||||||||| ||   |||   || ||  ||| ||||||||||||||||         ||||||| || |||||||||||||||| ||| ||||||||| ||||   ||||    |||    ||||| |||||  |||| |||||                ||||  ||||       
        TCC  TTTATAGTTAAGTAT GGAG TTTGAAAT CCCAA CA   TTAA  TTGG   TTGATTATTAACA AG   AATTTGG ATTTGAAA      AC TAGTTAAATGTGGGAGAA AT   AAG   AA CT  TTG AGCGCACTTTGAATAT         TTAATTT AG GATTTGAAGGTATTTA TTA TTAAATCTG AGAA   TGTT    GAG    TTTTG TGGGT  GTAA TGAGA                TTTG  CATA      
AATAAAAA   CT               -    A        T     -  GTG    AT    AAC             T  TTC       A        ------  A                  T  -AC   ACA  C  TT   G                -CAACACAG       -  A                C   A         -    -CC    TTAA   TAAC     A     AC    A     TTAACAGGAAAAACAT    GT    AACTTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End