SE1220110

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11833
  • Citrullus lanatus
  • SE1220110
  • Mutator
  • M15
  • scaffold57:317987-318221
  • AAAAAAATA
  • GGGATGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAAAAATA    T   TTTAAAT       CAC        A  A   C       A         A                G CCACGATAGAC                    --   GC
         GGGA GTT       ATGGTAA   TGTTGAAA TA TTA AAATATA CAAAATTTT CTTTTTATCTGTGATA A           CTAGATAGACATCTATCACT  TTA  
         |||| |||       |||||||   |||||||| || ||| ||||||| ||||||||| |||||||||||||||| |           ||||||||||||||||||||  |||   
         CCCT TAA       TACCGTT   ATAACTTT AT AAT TTTATAT GTTTTAAAA GGAAGATAGGCGCTAT T           GATCTATCTGTAGATAGTGA  GAT  
ATAAAAAAA    T   TAAAATT       TTA        -  A   A       C         C                G ----------A                    CA   AG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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