SE1250111

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11834
  • Citrullus lanatus
  • SE1250111
  • PIF/harbinger
  • To10
  • scaffold161:162278-162757
  • TTA
  • AGGCCACGTTTCC

Secondary structure and sequence

TSD    TIR
5'



3'
TT           -         A  -     ---   -       TAA ---- TAAAAATTGGGCCCCATTTGATTAAATTTGGTGTTGTTTACCTATGTTATGTACTCGTACTGATATCTAGGGCCCATGTCCAAATCTGTAAGAAAAAGTGCAAACTAAGGCGAGTGGAGGGTGATCAATCTAATTGTGCTTGAAAACTACATGTCAATACCATGATCGTTACCGTTACCGTTACAAATGTTA
  AGGCCACGTTT CCTAGTAGA AC GTAAT   AAA TCAATGG   T    C                                                                                                                                                                                                
  ||||||||||| ||||||||| || |||||   ||| |||||||   |    |                                                                                                                                                                                                 
  TCCGGTGCAAA GGTTAGGCA TT CTTTT   CAC TTAACTT   T    T                                                                                                                                                                                                
AT           T         -  A     AAC   A       --- ACTC AAGGTAACTCCCTAGTTAGCATTACCCAGAGTTGGCGTTTACATTAACTTAACGAAAACTAGTGTAAATGAATCTTACTTAGACGATGTAAATAACAATGGTAATGGGATGGAAAATCCCAGTTTGCCATTACGATTGCCATTTACATTGTCATTTATATTGTTTAAGTGTTAAAAGTATGACATTGTTATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End