SE1220113

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11836
  • Citrullus lanatus
  • SE1220113
  • Mutator
  • M5
  • scaffold84:324530-324869
  • AAAAAACAA
  • GGGCAAATTGCAAAAACCACCCGTAAAGTATAGTGGTAGTTGCAATTATATCCTTAAACTTTCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAAAACAA                      G      ATA                                 TAGTAACAATTGGCCCCTAA    CTAAAAGTGTTAAAATTGGGCCCCTAAACTTACAATTTGCAAAAATTGAATCCACAAGTGATAAAAATTGAACCCTCAAAC
         GGGCAAATTGCAAAAACCACCC TAAAGT   GTGGTAGTTGCAATTATATCCTTAAACTTTCAA                    ACTT                                                                                 
         |||||||||||||||||||||| ||||||   |||||||||||||||||||||||||||||||||                    ||||                                                                                  
         CCCGTTTAACGTTTTTGGTGGG ATTTCA   TACTATCAACGTTAATATGGGAATTTGAAAGTT                    AATT                                                                                 
AACAAAAAA                      G      CAC                                 ------------------TA    TTAACTCGGGAGTTGGAATAGGTTTACAATTTAAACTTTGGAGTTTGAATGTATTGATATATTTAACATTATTAACATATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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