Plant MITE

SE1220114

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_11837
Citrullus lanatus
SE1220114
Mutator
M5
scaffold121:150098-150424
TAGAAACTT
CTTGGGCAAATTGTCAAAAACCACCC

Secondary structure and sequence

TSD TIR

5'

3'

TAGAAA  T          T      C     CTTA      A  G  A           -           ATA   A   T           -A     GGCATTCAAACTAACATAATTGTATAAATTGTAACATTTGCATAAATTTGGAGGTTTAATTTTTA
      CT GGGCAAATTG CAAAAA CACCC    AGTATG TG TA TTGCAATTATA CTCTTAAACTT   TAA TGT AAAATTGGGTC  AATTG                                                                 
      || |||||||||| |||||| |||||    |||||| || || ||||||||||| |||||||||||   ||| ||| |||||||||||  |||||                                                                  
      GA CTCGTTTAAC GTTTTT GTGGG    TCATAC AC AT AACGTTAATGT GGGAGTTTGAA   GTT ACA TTTTAACCCGG  ATTTG                                                                 
TTCAAA  T          -      T     AACA      C  A  C           A           --A   A   T           GG     AAGATGTTTACAAATTTAATCTGAGAGTTCTAATGTTATTAACATCTTTAAACTGGGTGTTTACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE1220114

TAGAAACTTGGGCAAATTGTCAAAAACCACCCCTTAAGTATGATGGTAATTGCAATTATACTCTTAAACTTATATAAATGTTAAAATTGGGTCAAATTGGGCATTCAAACTAACATAATTGTATAAATTGTAACATTTGCATAAATTTGGAGGTTTAATTTTTATCATTTGTGGGTCAAATTTCTACAATTATTGTAATCTTGAGAGTCTAATTTAAACATTTGTAGAAGTTTAGGGGCCCAATTTTTACAATTGAAAGTTTGAGGGATGTAATTGCAACTAACACCATACTACAAGGGTGTTTTTTGCAATTTGCTCTAGAAACTT

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