SE1220115

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11838
  • Citrullus lanatus
  • SE1220115
  • Mutator
  • M14
  • scaffold266:377307-377872
  • TAATTTTTA
  • TTAGGGCAAATATCAATTTATACATGTAAACTTTGGAAGTTGTAACAACTAAAAGCTTGAAATAATGATTCTATCAATT

Secondary structure and sequence

TSD    TIR
5'



3'
TAATTT      C                A G          A       A   CTA   G      A        C        TAAAA          CATAAA   A     G       -----------    ---  AAATTT ATTCGATCAATGTCGGGGGAAACATATAACTTAAGTCAATTAAATTCCTAAATTTTTCATCAGTCAATCAATTTAGATTATTCATTACAATTTCCTTTGAAAATCATTCTATGCATTAATTCTCAGACGTGTGTAGACTTCTT
      TTAGGG AAATATCAATTTATAC T TAAACTTTGG AGTTGTA CAA   AAA CTTGAA TAATGATT TATCAATT     TCTGAGCTTT      TGT TCAAT TACACTC           TCCT   CC      C                                                                                                                                               
      |||||| |||||||||||||||| | |||||||||| ||||||| |||   ||| |||||| |||||||| ||||||||     ||||||||||      ||| ||||| |||||||           ||||   ||      |                                                                                                                                                
      AATCCC TTTATAGTTAAATGTG G ATTTGAAATT TTAATAT GTT   TTT GGATTT ATTATTAA ATAGTTAA     GGATTTGAAA      ACA AGTTA ATGTGGG           AAGT   AC      C                                                                                                                                               
ATTTTT      T                G G          C       A   ACA   G      A        C        CATTG          ACAATC   C     A       AATTATAATAC    CAA  ------ TTTTTTGTGGTACACTTTTAATATTAACAATAACTAATTTGGAGATATGAAAATACTTACTTAGTTAAATCTGAGAATTTTAAAAGGAAACCTTTAGCAGGTATGTAAATGTAATTAGTAGGTAAAACATTTTGACTGTAAAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End