SE1220118

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11841
  • Citrullus lanatus
  • SE1220118
  • Mutator
  • M5
  • scaffold22:2356859-2357127
  • TTGATTTTT
  • GGGAAAATTGCAAAAATTATCTCTAAAATATGGCTGTAGTTGCAATTAGACACTTAAACTTTCAATTTTAAAAATTAAACTCTCGAAATTGTATAAATGTTAAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTGATTTTT   A           ATT      A  A     CT                A               T         AA    C   A  G A              AA   TAATTGACCCGTCAA
         GGG AAATTGCAAAA   ATCTCT AA TATGG  GTAGTTGCAATTAGAC CTTAAACTTTCAATT TAAAAATTA  CTCT GAA TT T TAAATGTTAAAATT  GTC               
         ||| |||||||||||   |||||| || |||||  |||||||||||||||| ||||||||||||||| |||||||||  |||| ||| || | ||||||||||||||  |||                
         CCC TTTAACGTTTT   TGGAGA TT ATACT  CATCAACGTTAATCTG GAGTTTGAAAGTTAA ATTTTTAAT  GGGA TTT AA A GTTTACAATTTTAA  TTG               
TTTTTAGTT   G           -GC      C  C     AT                G               C         CC    -   G  G A              -C   AAGTTAATATATTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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