SE1220120

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11843
  • Citrullus lanatus
  • SE1220120
  • Mutator
  • M5
  • scaffold162:1986898-1987250
  • TTATTATTA
  • GGCAAATTGCAAAAACCACCGCTGAATTGTGGTGGTAGTTGCAGTTACACTCTCAAACTTTTAATTGTAAAAATTGGGCCTCTAAACTTTTACAAGTATTAAAATTGGACCCTCAAGCTTACAATAATTGTAGAAATTGGACACAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATTATTAT  C                 G     T           T        C     C            G              C    CTT     --   A       ----------      C  A        A        GA     GAC    AAATG    AA    AC
          GG AAATTGCAAAAACCACC CTGAA TGTGGTGGTAG TGCAGTTA ACTCT AAACTTTTAATT TAAAAATTGGGCCT TAAA   TTACA  AGT TTAAAAT          TGGACC TC AGCTTACA TAATTGTA  AATTG   ACAT     ATAA  TTGA  
          || ||||||||||||||||| ||||| ||||||||||| |||||||| ||||| |||||||||||| |||||||||||||| ||||   |||||  ||| |||||||          |||||| || |||||||| ||||||||  |||||   ||||     ||||  ||||   
          CC TTTAACGTTTTTGGTGG GATTT ATACCACCATC ATGTTAAT TGGGA TTTGAAAGTTAA ATTTTTAACTCGGG GTTT   AATGT  TCA AATTTTA          ACCTGG AG TTGAATGT ATTAACAT  TTAAC   TGTA     TATT  AATT  
ATTATTATTC  T                 G     C           C        A     A            A              A    --T     AT   C       ACCTAGTTTA      A  C        -        AC     -AT    -AAGA    GA    CC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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