SE1250121

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_11844
  • Citrullus lanatus
  • SE1250121
  • PIF/harbinger
  • To4
  • scaffold17:2229110-2229425
  • TAA
  • AGGCCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     C GTTAT           A      G    T   T          C    C    AGACACTACTTCCACCTACAAATTTA   -       A   -  TTTTTACCAA     - AAAAAACCAAGTCAAAATTTGAAAACTAAGAAAAAGAATAGATTTTAAAAAC
  AGGCC C     GTAACCATTTC TTTTTT TTTT TTT TTTTTGAAAA TAAG CTAT                          TTC CTTTGTT TCT AC          TGGTT T                                                    
  ||||| |     ||||||||||| |||||| |||| ||| |||||||||| |||| ||||                          ||| ||||||| ||| ||          ||||| |                                                     
  TCCGG G     CATTGGTAAAG AAAAAA AAAA AAA AAAAATTTTT ATTC GATA                          AAG GAAATAA AGA TG          AACGT G                                                    
AA     A -AAAC           C      A    T   T          A    A    -------------------------A   A       -   A  ----TAACTA     A AGAGAACTCATGTTATTAACTTAAAAAACGGTTTAAAGTTTTTGTTTTCGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3